JOURNAL OF LIGHT INDUSTRY

CN 41-1437/TS  ISSN 2096-1553

DNA逻辑自组装体构建的研究进展

李金城 孙军伟

李金城, 孙军伟. DNA逻辑自组装体构建的研究进展[J]. 轻工学报, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009
引用本文: 李金城, 孙军伟. DNA逻辑自组装体构建的研究进展[J]. 轻工学报, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009
LI Jin-cheng and SUN Jun-wei. Research progress in the construction of DNA logic self-assembly[J]. Journal of Light Industry, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009
Citation: LI Jin-cheng and SUN Jun-wei. Research progress in the construction of DNA logic self-assembly[J]. Journal of Light Industry, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009

DNA逻辑自组装体构建的研究进展

  • 基金项目: 国家自然科学基金项目(61472371,61472372,61572446);郑州轻工业学院博士科研启动项目(2014BSJJ044)

  • 中图分类号: TP309;TP18

Research progress in the construction of DNA logic self-assembly

  • Received Date: 2016-01-02
    Available Online: 2016-12-15

    CLC number: TP309;TP18

  • 摘要: 对DNA自组装原理、DNA编码序列设计、DNA自组装基元和自组装体的构建等方面的研究现状进行了述评,提出构建复杂的DNA自组装体仍是该领域的研究难题,未来的研究将主要集中于三方面:1)基于DNA的热力学属性和物理化学属性,建立DNA自组装基元类型库和DNA自组装结构体;2)整合和挖掘高通量的DNA自组装实证数据,以数据为驱动,搭建适合描述DNA自组装体的系统模型;3)进行DNA自组装载药体系的可控性、适应性和应用性分析.
    1. [1]

      SEEMAN N C.Biochemistry and structural DNA nanotechnology:an evolving symbiotic relationship[J].Biochemistry,2003,42(24):7259.

    2. [2]

      CHEN H L,SCHULMAN R,GOEL A,et al.Reducing facet nucleation during algorithmic self-assembly[J].Nano Letters,2007,7(9):2913.

    3. [3]

      GARZON M H,DEATON R J.Codeword design and information encoding in DNA ensembles[J].Natural Computing,2004,3(3):253.

    4. [4]

      SHIN S Y,LEE I H,KIM D M,et al.Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing[J].IEEE Trans Evolut Comput,2005,9(2):143.

    5. [5]

      FELDKAMP U,RAUHE H,BANZHAF W.Software tools for DNA sequence design[J].Genet Program Evol M,2003,4(2):153.

    6. [6]

      ZHANG K,XU J,GENG X,et al.Improved taboo search algorithm for designing DNA sequence[J].Prog Nat Sci,2008,18(5):623.

    7. [7]

      ZHANG Q,WANG B.An improved genetic algorithm for design of DNA sequence sets[J].J Comput Theor Nanosci,2010,7(6):1159.

    8. [8]

      XIAO J H,ZHANG X Y,XU J.A membrane evolutionary algorithm for DNA sequence design in DNA computing[J].Chin Sci Bull,2012,57(6):698.

    9. [9]

      王延峰,崔光照.DNA编码序列的设计与优化[M].北京:电子工业出版社,2013.

    10. [10]

      FU T J,TSE-DINH Y C,SEEMAN N C.Holliday junction crossover topology[J].J Mol Biol,1994,236(11):91.

    11. [11]

      KALLENBACH N R,MA R I,SEEMAN N C.An immobile nucleic-acid junction constructed from oligonucleotides[J].Nature,1983,305:829.

    12. [12]

      MA R I,KALLENBACH N R,SHEARDY R D,et al.Three-arm nucleic acid junctions are flexible[J].Nucleic Acids Res,1996,14(24):9745.

    13. [13]

      SEEMAN N C.De novo design of sequences for nucleic-acid structural-engineering[J].J Biomol Struct Dyn,1990,8(3):573.

    14. [14]

      SEEMAN N C.The perils of polynucleotides:the experimental gap between the design and assembly of unusual DNA structures[C]//Proceedings of the Second Annual Meeting on DNA-based Computers, Providence:American Mathematical Society,1996.

    15. [15]

      DU S M,SEEMAN N C.The construction of a trefoil knot from a DNA branched junction motif[J].Biopolymers,1994,34(11):31.

    16. [16]

      ZHANG Y,SEEMAN N C.The construction of a DNA truncated octahedron[J].J Am Chem Soc,1994,116(5):1661.

    17. [17]

      LIU F,SHA R,SEEMAN N C.Modifying the surface features of two dimensional DNA crystals[J].J Am Chem Soc,1999,121(5):917.

    18. [18]

      FU T J,SEEMAN N C.DNA double-crossover molecules[J].Biochemistry,1993,32:3211.

    19. [19]

      LABEAN T H,YAN H,KOPATSCH J,et al.Construction, analysis,ligation,and self-assembly of DNA triple crossover complexes[J].J Am Chem Soc,2000,122:1848.

    20. [20]

      REISHUS D,SHAW B,BRUN Y,et al.Self-assembly of DNA double-double crossover complexes into high-density,doubly connected,planar structures[J].J Am Chem Soc,2005,127:17590.

    21. [21]

      MATHIEU F,LIAO S P,KOPATSCHT J,et al.Six-helix bundles designed from DNA[J].Nano Lett,2005(5):661.

    22. [22]

      ROTHEMUND P W K.Folding DNA to create nanoscale shapes and patterns[J].Nature,2006,440:297.

    23. [23]

      DOUGLAS S M,CHOU J J,SHIH W M.DNA-nanotube-induced alignment of membrane proteins for NMR structure determination[J].Proc Natl Acad Sci USA,2007,104:6644.

    24. [24]

      ANDERSEN E S,DONG M,NIELSEN M M,et al.Self-assembly of a nanoscale DNA box with a controllable lid[J].Nature,2009,459:73.

    25. [25]

      HAN D,PAL S,NANGREAVE J,et al.DNA origami with complex curvatures in three-dimensional space[J].Science,2011,332:342.

    26. [26]

      WEI B,DAI M,YIN P.Complex shapes self-assembled from single-stranded DNA tiles[J].Nature,2012,485:623.

    27. [27]

      KE Y,ONG L L,SHIH W M,et al.Three-dimensional structures self-assembled from DNA bricks[J].Science,2012,338:1177.

    28. [28]

      SHI X,LU W,WANG Z,et al.Programmable DNA tile self-assembly using a hierarchical subtile strategy[J].Nanotechnology,2014(25):075602.

    29. [29]

      TIAN C,LI X,LIU Z,et al.Directed self-assembly of DNA tiles into complex nanocages[J].Angewandte Chemie,2014,126(31):8179.

    30. [30]

      LIU Z,TIAN C,YU J,et al.Self-assembly of responsive multilayered DNA nanocages[J].J Am Chem Soc,2015,137(5):1730.

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  • 收稿日期:  2016-01-02
  • 刊出日期:  2016-12-15
通讯作者: 陈斌, bchen63@163.com
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李金城, 孙军伟. DNA逻辑自组装体构建的研究进展[J]. 轻工学报, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009
引用本文: 李金城, 孙军伟. DNA逻辑自组装体构建的研究进展[J]. 轻工学报, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009
LI Jin-cheng and SUN Jun-wei. Research progress in the construction of DNA logic self-assembly[J]. Journal of Light Industry, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009
Citation: LI Jin-cheng and SUN Jun-wei. Research progress in the construction of DNA logic self-assembly[J]. Journal of Light Industry, 2016, 31(6): 62-68. doi: 10.3969/j.issn.2096-1553.2016.6.009

DNA逻辑自组装体构建的研究进展

  • 郑州轻工业学院 电气信息工程学院, 河南 郑州 450002
基金项目:  国家自然科学基金项目(61472371,61472372,61572446);郑州轻工业学院博士科研启动项目(2014BSJJ044)

摘要: 对DNA自组装原理、DNA编码序列设计、DNA自组装基元和自组装体的构建等方面的研究现状进行了述评,提出构建复杂的DNA自组装体仍是该领域的研究难题,未来的研究将主要集中于三方面:1)基于DNA的热力学属性和物理化学属性,建立DNA自组装基元类型库和DNA自组装结构体;2)整合和挖掘高通量的DNA自组装实证数据,以数据为驱动,搭建适合描述DNA自组装体的系统模型;3)进行DNA自组装载药体系的可控性、适应性和应用性分析.

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